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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038063 through 18771 annotations produced 2 hits



Octbeta2R (Octbeta2R):

Annotation Number : CG6989
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038063
Gbrowse : chr3R:8378365-8380608 (-) // 100.0 //
Probeset : 1633087_at
Accessions : protein= NP_001034049; /// NP_001163596;, nucleotide= NM_001038960; /// NM_001170125;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic ann
Interpro : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
FlyMine data for FBgn0038063.
BDGP gene expression has embryonic in situ data for CG6989: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0038063 available for purchase.
VDRC has 4 RNAi stocks for FBgn0038063 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 00 of 4 1.20None
Head5 10 of 4 1.00None
Eye4 10 of 4 0.94None
Thoracicoabdominal ganglion2 10 of 4 0.60None
Salivary gland2 00 of 4 0.45None
Crop7 10 of 4 1.40None
Midgut1 00 of 4 0.20None
Tubule2 00 of 4 0.50Down
Hindgut5 00 of 4 1.10None
Heart2 00 of 4 0.48None
Fat body1 00 of 4 0.20None
Ovary1 00 of 4 0.20None
Testis9 22 of 4 1.80None
Male accessory glands4 20 of 4 0.80None
Virgin spermatheca3 00 of 4 0.58None
Mated spermatheca4 10 of 4 0.90None
Adult carcass4 00 of 4 0.80None
Larval CNS0 00 of 4 0.11None
Larval Salivary gland1 00 of 4 0.22None
Larval midgut0 00 of 4 0.18None
Larval tubule2 10 of 4 0.60None
Larval hindgut4 10 of 4 0.82None
Larval fat body3 20 of 4 0.80None
Larval trachea2 10 of 4 0.50None
Larval carcass30 43 of 4 6.04Up
S2 cells (growing)2 00 of 4 0.46None
Whole fly5 20 of 4



Octbeta2R (Octbeta2R):

Annotation Number : CG18553
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038063
Gbrowse : chr3R:8385773-8386676 (-) // 100.0 //
Probeset : 1641186_at
Accessions : protein= NP_001034049; /// NP_001163596;, nucleotide= NM_001038960; /// NM_001170125;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic ann
Interpro : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
FlyMine data for FBgn0038063.
BDGP gene expression has embryonic in situ data for CG6989: 4 pix of staining in 1 body parts.
Homophila reports that CG18553 is a close match (9e-11) to human gene CBBM;CBP;OPN1LW;RCP (NP_064445), a gene associated with Blue-cone monochromacy, 303700 (3);Colorblindness, protan (3).
TRiP has 1 RNAi stocks for FBgn0038063 available for purchase.
VDRC has 4 RNAi stocks for FBgn0038063 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 14 of 4 4.30Up
Head9 01 of 4 1.90None
Eye8 22 of 4 1.60None
Thoracicoabdominal ganglion15 33 of 4 3.00Up
Salivary gland12 21 of 4 2.36None
Crop19 24 of 4 3.70Up
Midgut5 10 of 4 1.10None
Tubule3 00 of 4 0.80Down
Hindgut5 20 of 4 1.00None
Heart5 10 of 4 1.12None
Fat body6 20 of 4 1.36None
Ovary5 01 of 4 1.20None
Testis5 01 of 4 1.00None
Male accessory glands12 20 of 4 2.30None
Virgin spermatheca7 20 of 4 1.51None
Mated spermatheca5 00 of 4 1.15None
Adult carcass16 11 of 4 3.10Up
Larval CNS7 14 of 4 1.54None
Larval Salivary gland10 21 of 4 1.96None
Larval midgut3 00 of 4 0.74None
Larval tubule2 00 of 4 0.50None
Larval hindgut3 00 of 4 0.65None
Larval fat body5 20 of 4 1.10None
Larval trachea7 31 of 4 1.53None
Larval carcass22 14 of 4 4.36Up
S2 cells (growing)7 11 of 4 1.49None
Whole fly5 20 of 4

Looking for FBgn0038063. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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