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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038065 through 18771 annotations produced 1 hits



(CG6359):

Annotation Number : CG6359
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038065
Gbrowse : chr3R:8453762-8455790 (+) // 100.0 //
Probeset : 1638667_a_at
Accessions : protein= NP_650214;, nucleotide= NM_141957;
Pathway : engulfment // inferred from mutant phenotype /// 0007154 // cell communication // inferred from electronic annotation"
FlyMine data for FBgn0038065.
BioGrid reports that CG6359 interacts with CG8155 CG9754 .
VDRC has 2 RNAi stocks for FBgn0038065 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain624 ± 74 of 4 1.30Up
Head875 ± 224 of 4 1.80Up
Eye1844 ± 214 of 4 3.71Up
Thoracicoabdominal ganglion716 ± 84 of 4 1.40Up
Salivary gland375 ± 124 of 4 0.75Down
Crop631 ± 184 of 4 1.30Up
Midgut286 ± 124 of 4 0.60Down
Tubule758 ± 134 of 4 1.50Up
Hindgut573 ± 84 of 4 1.20Up
Heart1510 ± 644 of 4 3.04Up
Fat body492 ± 194 of 4 0.99None
Ovary625 ± 104 of 4 1.30Up
Testis666 ± 334 of 4 1.30Up
Male accessory glands769 ± 264 of 4 1.50Up
Virgin spermatheca676 ± 154 of 4 1.36Up
Mated spermatheca738 ± 304 of 4 1.49Up
Adult carcass548 ± 134 of 4 1.10Up
Larval CNS769 ± 264 of 4 1.55Up
Larval Salivary gland430 ± 194 of 4 0.87Down
Larval midgut673 ± 84 of 4 1.36Up
Larval tubule1456 ± 504 of 4 2.90Up
Larval hindgut787 ± 224 of 4 1.58Up
Larval fat body1244 ± 964 of 4 2.50Up
Larval trachea827 ± 374 of 4 1.67Up
Larval carcass787 ± 254 of 4 1.59Up
S2 cells (growing)1435 ± 344 of 4 2.89Up
Whole fly496 ± 74 of 4

Looking for FBgn0038065. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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