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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038068 through 18771 annotations produced 1 hits



(CG11600):

Annotation Number : CG11600
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038068
Gbrowse : chr3R:8462289-8463602 (+) // 100.0 //
Probeset : 1630221_at
Accessions : protein= NP_650217;, nucleotide= NM_141960;
Interpro : 0004806 // triglyceride lipase activity // inferred from sequence or structural similarity /// 0004806 // triglyceride l
FlyMine data for FBgn0038068.
Homophila reports that CG11600 is a close match (3e-40) to human gene LIPA (NP_000226), a gene associated with Cholesteryl ester storage disease (3);Wolman disease (3).
VDRC has 2 RNAi stocks for FBgn0038068 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 01 of 4 0.50Down
Head2 ± 11 of 4 0.30Down
Eye2 ± 00 of 4 0.27Down
Thoracicoabdominal ganglion3 ± 20 of 4 0.40None
Salivary gland16 ± 31 of 4 1.94None
Crop6 ± 10 of 4 0.80None
Midgut6 ± 01 of 4 0.80None
Tubule2 ± 00 of 4 0.30Down
Hindgut5 ± 11 of 4 0.60None
Heart2 ± 10 of 4 0.28Down
Fat body9 ± 22 of 4 1.12None
Ovary1 ± 00 of 4 0.20Down
Testis4 ± 00 of 4 0.50Down
Male accessory glands488 ± 764 of 456.80Up
Virgin spermatheca9 ± 21 of 4 1.07None
Mated spermatheca9 ± 12 of 4 1.12None
Adult carcass11 ± 20 of 4 1.30None
Larval CNS5 ± 13 of 4 0.67None
Larval Salivary gland7 ± 11 of 4 0.92None
Larval midgut4 ± 10 of 4 0.48Down
Larval tubule5 ± 00 of 4 0.70None
Larval hindgut4 ± 10 of 4 0.53Down
Larval fat body4 ± 10 of 4 0.50Down
Larval trachea2 ± 11 of 4 0.35Down
Larval carcass5 ± 11 of 4 0.68None
S2 cells (growing)4 ± 00 of 4 0.47Down
Whole fly8 ± 14 of 4

Looking for FBgn0038068. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime