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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038070 through 18771 annotations produced 1 hits



(CG6753):

Annotation Number : CG6753
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038070
Gbrowse : chr3R:8466062-8468295 (-) // 100.0 //
Probeset : 1640901_at
Accessions : protein= NP_650219;, nucleotide= NM_141962;
Interpro : 0004806 // triglyceride lipase activity // inferred from sequence or structural similarity /// 0004806 // triglyceride l
FlyMine data for FBgn0038070.
Homophila reports that CG6753 is a close match (7e-49) to human gene LIPA (NP_000226), a gene associated with Cholesteryl ester storage disease (3);Wolman disease (3).
VDRC has 2 RNAi stocks for FBgn0038070 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 02 of 4 1.50None
Head19 ± 14 of 4 4.40Up
Eye28 ± 14 of 4 6.65Up
Thoracicoabdominal ganglion3 ± 10 of 4 0.80None
Salivary gland39 ± 44 of 4 9.12Up
Crop6 ± 11 of 4 1.60None
Midgut9 ± 10 of 4 2.20None
Tubule6 ± 00 of 4 1.40Up
Hindgut8 ± 12 of 4 1.90None
Heart6 ± 02 of 4 1.44None
Fat body7 ± 30 of 4 1.65None
Ovary2 ± 10 of 4 0.60None
Testis6 ± 13 of 4 1.40None
Male accessory glands6 ± 20 of 4 1.50None
Virgin spermatheca5 ± 10 of 4 1.26None
Mated spermatheca4 ± 10 of 4 1.12None
Adult carcass10 ± 10 of 4 2.50Up
Larval CNS10 ± 24 of 4 2.37Up
Larval Salivary gland16 ± 24 of 4 3.87Up
Larval midgut15 ± 22 of 4 3.65Up
Larval tubule9 ± 11 of 4 2.30None
Larval hindgut24 ± 14 of 4 5.62Up
Larval fat body9 ± 20 of 4 2.20None
Larval trachea78 ± 104 of 418.27Up
Larval carcass22 ± 44 of 4 5.16Up
S2 cells (growing)5 ± 10 of 4 1.24None
Whole fly4 ± 11 of 4

Looking for FBgn0038070. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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