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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038074 through 18771 annotations produced 1 hits



(CG6188):

Annotation Number : CG6188
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038074
Gbrowse : chr3R:8500330-8501798 (+) // 100.0 //
Probeset : 1634551_at
Accessions : protein= NP_650223;, nucleotide= NM_141966;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0005542 // folic acid binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferr
FlyMine data for FBgn0038074.
BDGP gene expression has embryonic in situ data for CG6188: 18 pix of staining in 2 body parts.
Homophila reports that CG6188 is a close match (3e-95) to human gene GNMT (NP_061833), a gene associated with Glycine N-methyltransferase deficiency, 606664 (3).
VDRC has 3 RNAi stocks for FBgn0038074 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 13 of 4 0.10Down
Head464 ± 1184 of 4 3.70None
Eye387 ± 2304 of 4 3.11None
Thoracicoabdominal ganglion35 ± 104 of 4 0.30Down
Salivary gland23 ± 22 of 4 0.18Down
Crop24 ± 64 of 4 0.20Down
Midgut10 ± 10 of 4 0.10Down
Tubule82 ± 193 of 4 0.70Down
Hindgut145 ± 204 of 4 1.20None
Heart2730 ± 1814 of 421.91Up
Fat body3511 ± 5824 of 428.18Up
Ovary3 ± 10 of 4 0.00Down
Testis10 ± 12 of 4 0.10Down
Male accessory glands46 ± 54 of 4 0.40Down
Virgin spermatheca3356 ± 4514 of 426.94Up
Mated spermatheca3008 ± 2434 of 424.14Up
Adult carcass2720 ± 4184 of 421.80Up
Larval CNS6 ± 22 of 4 0.05Down
Larval Salivary gland55 ± 104 of 4 0.45Down
Larval midgut8 ± 10 of 4 0.07Down
Larval tubule10 ± 11 of 4 0.10Down
Larval hindgut46 ± 243 of 4 0.37Down
Larval fat body1368 ± 3864 of 411.00Up
Larval trachea9 ± 71 of 4 0.07Down
Larval carcass11 ± 22 of 4 0.10Down
S2 cells (growing)14 ± 14 of 4 0.11Down
Whole fly124 ± 154 of 4

Looking for FBgn0038074. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime