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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038078 through 18771 annotations produced 1 hits



(CG14391):

Annotation Number : CG14391
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038078
Gbrowse : chr3R:8519944-8520564 (-) // 100.0 //
Probeset : 1627099_at
Accessions : protein= NP_650225;, nucleotide= NM_141968;
FlyMine data for FBgn0038078.
VDRC has 1 RNAi stocks for FBgn0038078 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland4 ± 10 of 4 0.07Down
Crop1 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart2 ± 00 of 4 0.03Down
Fat body1 ± 10 of 4 0.02Down
Ovary0 ± 00 of 4 0.00Down
Testis774 ± 124 of 411.20Up
Male accessory glands3 ± 30 of 4 0.10Down
Virgin spermatheca5 ± 10 of 4 0.07Down
Mated spermatheca3 ± 10 of 4 0.05Down
Adult carcass2 ± 00 of 4 0.00Down
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.02Down
Larval midgut1 ± 00 of 4 0.02Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body58 ± 312 of 4 0.80None
Larval trachea4 ± 61 of 4 0.07Down
Larval carcass0 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly69 ± 84 of 4

Looking for FBgn0038078. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime