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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038084 through 18771 annotations produced 1 hits



beat-Vc (beat-Vc):

Annotation Number : CG14390
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038084
Gbrowse : chr3R:8572336-8580423 (-) // 100.0 //
Probeset : 1632015_at
Accessions : protein= NP_650230;, nucleotide= NM_141973;
Pathway : 0005576 // extracellular region // non-traceable author statement
FlyMine data for FBgn0038084.
VDRC has 2 RNAi stocks for FBgn0038084 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 ± 34 of 416.20Up
Head12 ± 23 of 4 3.90Up
Eye2 ± 00 of 4 0.75None
Thoracicoabdominal ganglion42 ± 24 of 412.90Up
Salivary gland9 ± 30 of 4 2.78None
Crop4 ± 10 of 4 1.40None
Midgut2 ± 10 of 4 0.60None
Tubule2 ± 00 of 4 0.80None
Hindgut3 ± 10 of 4 0.90None
Heart3 ± 10 of 4 1.04None
Fat body4 ± 00 of 4 1.28None
Ovary0 ± 00 of 4 0.30Down
Testis0 ± 00 of 4 0.20Down
Male accessory glands5 ± 40 of 4 1.70None
Virgin spermatheca2 ± 10 of 4 0.77None
Mated spermatheca3 ± 10 of 4 1.15None
Adult carcass3 ± 10 of 4 1.00None
Larval CNS22 ± 44 of 4 6.92Up
Larval Salivary gland6 ± 21 of 4 2.01None
Larval midgut3 ± 10 of 4 1.07None
Larval tubule3 ± 00 of 4 1.10None
Larval hindgut3 ± 20 of 4 1.02None
Larval fat body2 ± 00 of 4 0.70None
Larval trachea2 ± 10 of 4 0.64None
Larval carcass4 ± 10 of 4 1.34None
S2 cells (growing)3 ± 00 of 4 0.93None
Whole fly3 ± 00 of 4

Looking for FBgn0038084. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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