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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038089 through 18771 annotations produced 1 hits



davis-cup (d-cup):

Annotation Number : CG14387
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038089
Gbrowse : chr3R:8717776-8718544 (+) // 100.0 //
Probeset : 1632702_at
Accessions : protein= NP_650235;, nucleotide= NM_141978;
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation
FlyMine data for FBgn0038089.
BioGrid reports that CG14387 interacts with CG18627 CG9610 .
VDRC has 2 RNAi stocks for FBgn0038089 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head3 ± 00 of 4 0.10Down
Eye2 ± 10 of 4 0.10Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland11 ± 31 of 4 0.42Down
Crop5 ± 11 of 4 0.20Down
Midgut5 ± 00 of 4 0.20Down
Tubule5 ± 11 of 4 0.20Down
Hindgut2 ± 00 of 4 0.10Down
Heart3 ± 10 of 4 0.12Down
Fat body7 ± 51 of 4 0.29Down
Ovary4 ± 00 of 4 0.20Down
Testis228 ± 134 of 4 8.70Up
Male accessory glands7 ± 31 of 4 0.30Down
Virgin spermatheca5 ± 00 of 4 0.19Down
Mated spermatheca6 ± 21 of 4 0.23Down
Adult carcass6 ± 10 of 4 0.20Down
Larval CNS5 ± 11 of 4 0.21Down
Larval Salivary gland2 ± 10 of 4 0.11Down
Larval midgut2 ± 10 of 4 0.09Down
Larval tubule3 ± 00 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.09Down
Larval fat body24 ± 81 of 4 0.90None
Larval trachea2 ± 10 of 4 0.09Down
Larval carcass4 ± 00 of 4 0.15Down
S2 cells (growing)1 ± 00 of 4 0.07Down
Whole fly26 ± 24 of 4

Looking for FBgn0038089. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime