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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038090 through 18771 annotations produced 1 hits



(CG10909):

Annotation Number : CG10909
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038090
Gbrowse : chr3R:8735902-8737014 (-) // 100.0 //
Probeset : 1638218_at
Accessions : protein= NP_650236;, nucleotide= NM_141979;
Pathway : 0030532 // small nuclear ribonucleoprotein complex // inferred from sequence or structural similarity
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from
FlyMine data for FBgn0038090.
BioGrid reports that CG10909 interacts with CG11148 .
VDRC has 3 RNAi stocks for FBgn0038090 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head3 10 of 4 0.20Down
Eye0 00 of 4 0.04Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland2 00 of 4 0.10Down
Crop4 20 of 4 0.20Down
Midgut2 00 of 4 0.10Down
Tubule1 00 of 4 0.10Down
Hindgut3 00 of 4 0.10Down
Heart3 10 of 4 0.17Down
Fat body8 50 of 4 0.40Down
Ovary1 00 of 4 0.10Down
Testis296 124 of 414.00Up
Male accessory glands7 10 of 4 0.40Down
Virgin spermatheca4 10 of 4 0.20Down
Mated spermatheca3 20 of 4 0.15Down
Adult carcass2 00 of 4 0.10Down
Larval CNS2 10 of 4 0.11Down
Larval Salivary gland3 10 of 4 0.17Down
Larval midgut1 00 of 4 0.08Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut2 10 of 4 0.12Down
Larval fat body94 443 of 4 4.50None
Larval trachea5 30 of 4 0.24Down
Larval carcass1 00 of 4 0.06Down
S2 cells (growing)0 00 of 4 0.04Down
Whole fly21 10 of 4

Looking for FBgn0038090. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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