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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038097 through 18771 annotations produced 1 hits



(CG14384):

Annotation Number : CG14384
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038097
Gbrowse : chr3R:8791750-8792442 (-) // 100.0 //
Probeset : 1628277_at
Accessions : protein= NP_650241;, nucleotide= NM_141984;
FlyMine data for FBgn0038097.
VDRC has 1 RNAi stocks for FBgn0038097 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye3 ± 20 of 4 0.17Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland5 ± 10 of 4 0.22Down
Crop2 ± 10 of 4 0.10Down
Midgut3 ± 10 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.02Down
Fat body1 ± 00 of 4 0.05Down
Ovary0 ± 00 of 4 0.00Down
Testis327 ± 154 of 413.80Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.04Down
Mated spermatheca1 ± 10 of 4 0.08Down
Adult carcass4 ± 10 of 4 0.20Down
Larval CNS0 ± 00 of 4 0.02Down
Larval Salivary gland1 ± 00 of 4 0.05Down
Larval midgut2 ± 10 of 4 0.09Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut0 ± 00 of 4 0.03Down
Larval fat body34 ± 202 of 4 1.40None
Larval trachea2 ± 20 of 4 0.13Down
Larval carcass0 ± 00 of 4 0.03Down
S2 cells (growing)0 ± 00 of 4 0.03Down
Whole fly23 ± 24 of 4

Looking for FBgn0038097. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime