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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038100 through 18771 annotations produced 1 hits



polyA-binding protein interacting protein 2 (Paip2):

Annotation Number : CG12358
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038100
Gbrowse : chr3R:8806767-8810345 (+) // 100.0 //
Probeset : 1628632_at
Accessions : protein= NP_524334;, nucleotide= NM_079610;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038100.
VDRC has 4 RNAi stocks for FBgn0038100 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain253 ± 74 of 4 0.60Down
Head162 ± 224 of 4 0.40Down
Eye479 ± 164 of 4 1.05None
Thoracicoabdominal ganglion180 ± 234 of 4 0.40Down
Salivary gland70 ± 64 of 4 0.15Down
Crop169 ± 24 of 4 0.40Down
Midgut231 ± 44 of 4 0.50Down
Tubule111 ± 124 of 4 0.20Down
Hindgut275 ± 94 of 4 0.60Down
Heart554 ± 354 of 4 1.21None
Fat body167 ± 194 of 4 0.37Down
Ovary405 ± 184 of 4 0.90None
Testis1658 ± 424 of 4 3.60Up
Male accessory glands237 ± 164 of 4 0.50Down
Virgin spermatheca404 ± 64 of 4 0.88None
Mated spermatheca277 ± 114 of 4 0.61Down
Adult carcass264 ± 324 of 4 0.60Down
Larval CNS101 ± 94 of 4 0.22Down
Larval Salivary gland142 ± 24 of 4 0.31Down
Larval midgut135 ± 194 of 4 0.30Down
Larval tubule488 ± 434 of 4 1.10None
Larval hindgut200 ± 114 of 4 0.44Down
Larval fat body447 ± 634 of 4 1.00None
Larval trachea1371 ± 1834 of 4 3.00Up
Larval carcass202 ± 684 of 4 0.44Down
S2 cells (growing)345 ± 84 of 4 0.75Down
Whole fly457 ± 344 of 4

Looking for FBgn0038100. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime