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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038105 through 18771 annotations produced 1 hits



yellow-f2 (yellow-f2):

Annotation Number : CG8063
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038105
Gbrowse : chr3R:8819114-8820869 (-) // 100.0 //
Probeset : 1625835_at
Accessions : protein= NP_650247;, nucleotide= NM_141990;
Pathway : 0005576 // extracellular region // inferred from direct assay
Interpro : 0004167 // dopachrome isomerase activity // inferred from direct assay /// 0004167 // dopachrome isomerase activity // i
FlyMine data for FBgn0038105.
BDGP gene expression has embryonic in situ data for yellow-f2: 4 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0038105 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head154 ± 124 of 4 4.60Up
Eye99 ± 84 of 4 2.93Up
Thoracicoabdominal ganglion7 ± 20 of 4 0.20Down
Salivary gland4 ± 20 of 4 0.14Down
Crop85 ± 44 of 4 2.50Up
Midgut1 ± 00 of 4 0.00Down
Tubule5 ± 00 of 4 0.20Down
Hindgut128 ± 34 of 4 3.80Up
Heart212 ± 124 of 4 6.28Up
Fat body348 ± 324 of 410.30Up
Ovary1 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca484 ± 94 of 414.34Up
Mated spermatheca312 ± 204 of 4 9.25Up
Adult carcass212 ± 54 of 4 6.30Up
Larval CNS1 ± 10 of 4 0.04Down
Larval Salivary gland7 ± 20 of 4 0.23Down
Larval midgut0 ± 00 of 4 0.03Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut64 ± 64 of 4 1.90Up
Larval fat body10 ± 51 of 4 0.30Down
Larval trachea9 ± 40 of 4 0.28Down
Larval carcass2 ± 10 of 4 0.07Down
S2 cells (growing)31 ± 33 of 4 0.95None
Whole fly33 ± 44 of 4

Looking for FBgn0038105. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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