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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038106 through 18771 annotations produced 1 hits



(CG7488):

Annotation Number : CG7488
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038106
Gbrowse : chr3R:8821376-8822647 (+) // 100.0 //
Probeset : 1630932_at
Accessions : protein= NP_650248;, nucleotide= NM_141991;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferre
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0038106.
VDRC has 1 RNAi stocks for FBgn0038106 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain156 ± 54 of 4 1.00None
Head148 ± 44 of 4 1.00None
Eye185 ± 84 of 4 1.22Up
Thoracicoabdominal ganglion159 ± 74 of 4 1.00None
Salivary gland152 ± 124 of 4 1.00None
Crop171 ± 64 of 4 1.10None
Midgut170 ± 34 of 4 1.10Up
Tubule124 ± 24 of 4 0.80Down
Hindgut174 ± 34 of 4 1.10Up
Heart112 ± 24 of 4 0.74Down
Fat body124 ± 174 of 4 0.82Down
Ovary221 ± 24 of 4 1.50Up
Testis116 ± 34 of 4 0.80Down
Male accessory glands115 ± 24 of 4 0.80Down
Virgin spermatheca61 ± 54 of 4 0.41Down
Mated spermatheca78 ± 14 of 4 0.51Down
Adult carcass154 ± 74 of 4 1.00None
Larval CNS151 ± 74 of 4 0.99None
Larval Salivary gland206 ± 134 of 4 1.36Up
Larval midgut129 ± 54 of 4 0.85Down
Larval tubule138 ± 14 of 4 0.90None
Larval hindgut162 ± 34 of 4 1.07None
Larval fat body78 ± 44 of 4 0.50Down
Larval trachea158 ± 104 of 4 1.04None
Larval carcass115 ± 44 of 4 0.76Down
S2 cells (growing)277 ± 24 of 4 1.82Up
Whole fly152 ± 54 of 4

Looking for FBgn0038106. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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