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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038107 through 18771 annotations produced 2 hits



(CG17327):

Annotation Number : CG17327
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038107
Gbrowse : chr3R:8822589-8823404 (-) // 100.0 //
Probeset : 1626679_at
Accessions : protein= NP_650249; /// NP_731760;, nucleotide= NM_141992; /// NM_169488;
Interpro : 0004045 // aminoacyl-tRNA hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0038107.
BioGrid reports that CG17327 interacts with CG3880 CG4853 .
VDRC has 1 RNAi stocks for FBgn0038107 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain252 ± 84 of 4 1.60Up
Head155 ± 64 of 4 1.00None
Eye210 ± 114 of 4 1.33Up
Thoracicoabdominal ganglion275 ± 124 of 4 1.70Up
Salivary gland131 ± 64 of 4 0.83Down
Crop203 ± 34 of 4 1.30Up
Midgut96 ± 84 of 4 0.60Down
Tubule208 ± 54 of 4 1.30Up
Hindgut206 ± 64 of 4 1.30Up
Heart149 ± 54 of 4 0.95None
Fat body82 ± 84 of 4 0.52Down
Ovary218 ± 34 of 4 1.40Up
Testis102 ± 44 of 4 0.60Down
Male accessory glands77 ± 44 of 4 0.50Down
Virgin spermatheca80 ± 64 of 4 0.51Down
Mated spermatheca82 ± 34 of 4 0.52Down
Adult carcass132 ± 64 of 4 0.80Down
Larval CNS208 ± 144 of 4 1.32Up
Larval Salivary gland184 ± 44 of 4 1.16Up
Larval midgut80 ± 64 of 4 0.51Down
Larval tubule111 ± 84 of 4 0.70Down
Larval hindgut165 ± 44 of 4 1.04None
Larval fat body57 ± 14 of 4 0.40Down
Larval trachea260 ± 94 of 4 1.65Up
Larval carcass200 ± 164 of 4 1.26None
S2 cells (growing)417 ± 54 of 4 2.63Up
Whole fly158 ± 74 of 4



/// (CG17327 /// CG9133):

Annotation Number : CG17327
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038107
Gbrowse : chr3R:8822589-8823404 (-) // 100.0 //
Probeset : 1636305_a_at
Accessions : protein= NP_650249; /// NP_731760;, nucleotide= NM_141992; /// NM_169488;
Interpro : 0004045 // aminoacyl-tRNA hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0038107.
BioGrid reports that CG17327 interacts with CG3880 CG4853 .
VDRC has 1 RNAi stocks for FBgn0038107 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain286 ± 24 of 4 1.50Up
Head200 ± 104 of 4 1.00None
Eye249 ± 154 of 4 1.27Up
Thoracicoabdominal ganglion361 ± 164 of 4 1.80Up
Salivary gland119 ± 24 of 4 0.61Down
Crop223 ± 74 of 4 1.10Up
Midgut127 ± 74 of 4 0.60Down
Tubule322 ± 54 of 4 1.60Up
Hindgut220 ± 54 of 4 1.10Up
Heart165 ± 54 of 4 0.84Down
Fat body145 ± 254 of 4 0.74Down
Ovary272 ± 104 of 4 1.40Up
Testis140 ± 74 of 4 0.70Down
Male accessory glands110 ± 84 of 4 0.60Down
Virgin spermatheca182 ± 104 of 4 0.93None
Mated spermatheca199 ± 64 of 4 1.01None
Adult carcass180 ± 54 of 4 0.90None
Larval CNS276 ± 164 of 4 1.40Up
Larval Salivary gland132 ± 34 of 4 0.67Down
Larval midgut109 ± 64 of 4 0.55Down
Larval tubule137 ± 74 of 4 0.70Down
Larval hindgut212 ± 124 of 4 1.08None
Larval fat body101 ± 54 of 4 0.50Down
Larval trachea228 ± 184 of 4 1.16Up
Larval carcass194 ± 234 of 4 0.99None
S2 cells (growing)504 ± 74 of 4 2.56Up
Whole fly197 ± 74 of 4

Looking for FBgn0038107. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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