Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038109 through 18771 annotations produced 1 hits



(CG11656):

Annotation Number : CG11656
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038109
Gbrowse : chr3R:8835616-8836808 (+) // 100.0 //
Probeset : 1640336_at
Accessions : protein= NP_650251;, nucleotide= NM_141994;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038109.
BDGP gene expression has embryonic in situ data for CG11656: 4 pix of staining in 1 body parts.
BioGrid reports that CG11656 interacts with CG13656 CG15071 CG17564 CG11711 CG1212 CG12241 CG12868 CG13083 CG13867 CG16826 CG2146 CG2615 CG31357 CG3810 CG40127 CG4152 CG4173 CG4523 CG4747 CG5026 CG5857 CG6058 CG6398 CG6416 CG6845 CG8280 CG8532 CG8580 CG8866 CG9113 .
VDRC has 3 RNAi stocks for FBgn0038109 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.10Down
Head6 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland5 ± 10 of 4 0.10Down
Crop2 ± 10 of 4 0.10Down
Midgut11 ± 10 of 4 0.20Down
Tubule4 ± 00 of 4 0.10Down
Hindgut2 ± 00 of 4 0.00Down
Heart3 ± 10 of 4 0.06Down
Fat body6 ± 10 of 4 0.11Down
Ovary2 ± 00 of 4 0.00Down
Testis665 ± 314 of 412.30Up
Male accessory glands5 ± 20 of 4 0.10Down
Virgin spermatheca4 ± 10 of 4 0.08Down
Mated spermatheca4 ± 10 of 4 0.09Down
Adult carcass8 ± 20 of 4 0.20Down
Larval CNS3 ± 10 of 4 0.06Down
Larval Salivary gland3 ± 10 of 4 0.07Down
Larval midgut4 ± 10 of 4 0.09Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.04Down
Larval fat body123 ± 643 of 4 2.30None
Larval trachea5 ± 31 of 4 0.10Down
Larval carcass3 ± 00 of 4 0.06Down
S2 cells (growing)2 ± 00 of 4 0.05Down
Whole fly54 ± 34 of 4

Looking for FBgn0038109. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime