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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038110 through 18771 annotations produced 1 hits



(CG8031):

Annotation Number : CG8031
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038110
Gbrowse : chr3R:8834105-8836977 (-) // 100.0 //
Probeset : 1622973_at
Accessions : protein= NP_650252;, nucleotide= NM_141995;
FlyMine data for FBgn0038110.
BDGP gene expression has embryonic in situ data for CG8031: 10 pix of staining in 4 body parts.
VDRC has 3 RNAi stocks for FBgn0038110 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain79 ± 44 of 4 0.50Down
Head113 ± 64 of 4 0.80Down
Eye109 ± 54 of 4 0.75Down
Thoracicoabdominal ganglion127 ± 64 of 4 0.90None
Salivary gland123 ± 24 of 4 0.84Down
Crop155 ± 14 of 4 1.10None
Midgut338 ± 54 of 4 2.30Up
Tubule187 ± 34 of 4 1.30Up
Hindgut118 ± 54 of 4 0.80Down
Heart233 ± 64 of 4 1.60Up
Fat body266 ± 174 of 4 1.82Up
Ovary249 ± 134 of 4 1.70Up
Testis67 ± 64 of 4 0.50Down
Male accessory glands221 ± 124 of 4 1.50Up
Virgin spermatheca503 ± 224 of 4 3.45Up
Mated spermatheca389 ± 134 of 4 2.67Up
Adult carcass145 ± 34 of 4 1.00None
Larval CNS192 ± 354 of 4 1.32None
Larval Salivary gland239 ± 214 of 4 1.64Up
Larval midgut573 ± 354 of 4 3.92Up
Larval tubule1164 ± 114 of 4 8.00Up
Larval hindgut391 ± 474 of 4 2.68Up
Larval fat body1115 ± 1744 of 4 7.60Up
Larval trachea220 ± 134 of 4 1.51Up
Larval carcass318 ± 614 of 4 2.18None
S2 cells (growing)261 ± 164 of 4 1.79Up
Whole fly146 ± 64 of 4

Looking for FBgn0038110. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime