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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038115 through 18771 annotations produced 1 hits



(CG7966):

Annotation Number : CG7966
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038115
Gbrowse : chr3R:8875119-8877172 (-) // 100.0 //
Probeset : 1632517_at
Accessions : protein= NP_650256;, nucleotide= NM_141999;
Interpro : 0008430 // selenium binding // inferred from sequence or structural similarity /// 0008430 // selenium binding // inferr
FlyMine data for FBgn0038115.
VDRC has 2 RNAi stocks for FBgn0038115 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain88 ± 34 of 4 0.70Down
Head328 ± 324 of 4 2.50Up
Eye149 ± 84 of 4 1.15None
Thoracicoabdominal ganglion56 ± 14 of 4 0.40Down
Salivary gland309 ± 74 of 4 2.38Up
Crop493 ± 114 of 4 3.80Up
Midgut299 ± 74 of 4 2.30Up
Tubule650 ± 1374 of 4 5.00Up
Hindgut165 ± 34 of 4 1.30Up
Heart315 ± 124 of 4 2.42Up
Fat body386 ± 674 of 4 2.96Up
Ovary98 ± 34 of 4 0.80None
Testis5 ± 00 of 4 0.00Down
Male accessory glands181 ± 134 of 4 1.40Up
Virgin spermatheca517 ± 454 of 4 3.97Up
Mated spermatheca194 ± 274 of 4 1.49None
Adult carcass243 ± 154 of 4 1.90Up
Larval CNS92 ± 294 of 4 0.71None
Larval Salivary gland236 ± 54 of 4 1.82Up
Larval midgut158 ± 144 of 4 1.22None
Larval tubule294 ± 74 of 4 2.30Up
Larval hindgut329 ± 344 of 4 2.53Up
Larval fat body868 ± 1094 of 4 6.70Up
Larval trachea1024 ± 444 of 4 7.87Up
Larval carcass290 ± 204 of 4 2.23Up
S2 cells (growing)12 ± 12 of 4 0.09Down
Whole fly130 ± 114 of 4

Looking for FBgn0038115. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime