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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038118 through 18771 annotations produced 1 hits



timeout (timeout):

Annotation Number : CG7855
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038118
Gbrowse : chr3R:8914372-8989598 (+) // 100.0 //
Probeset : 1641590_at
Accessions : protein= NP_524341;, nucleotide= NM_079617;
FlyMine data for FBgn0038118.
BDGP gene expression has embryonic in situ data for timeout: 35 pix of staining in 16 body parts.
TRiP has 1 RNAi stocks for FBgn0038118 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038118 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 01 of 4 0.10Down
Head10 ± 32 of 4 0.20Down
Eye4 ± 10 of 4 0.06Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.00Down
Salivary gland11 ± 30 of 4 0.16Down
Crop7 ± 10 of 4 0.10Down
Midgut5 ± 10 of 4 0.10Down
Tubule6 ± 00 of 4 0.10Down
Hindgut8 ± 12 of 4 0.10Down
Heart5 ± 00 of 4 0.07Down
Fat body8 ± 11 of 4 0.12Down
Ovary195 ± 54 of 4 2.80Up
Testis56 ± 34 of 4 0.80Down
Male accessory glands14 ± 13 of 4 0.20Down
Virgin spermatheca9 ± 00 of 4 0.13Down
Mated spermatheca7 ± 10 of 4 0.11Down
Adult carcass10 ± 20 of 4 0.10Down
Larval CNS56 ± 94 of 4 0.81None
Larval Salivary gland33 ± 14 of 4 0.48Down
Larval midgut12 ± 22 of 4 0.17Down
Larval tubule13 ± 14 of 4 0.20Down
Larval hindgut18 ± 14 of 4 0.26Down
Larval fat body15 ± 13 of 4 0.20Down
Larval trachea31 ± 24 of 4 0.45Down
Larval carcass22 ± 24 of 4 0.32Down
S2 cells (growing)35 ± 34 of 4 0.51Down
Whole fly69 ± 24 of 4

Looking for FBgn0038118. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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