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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038123 through 18771 annotations produced 1 hits


Annotation Number : CG8508
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038123
Gbrowse : chr3R:9011244-9012232 (-) // 100.0 //
Probeset : 1637728_at
Accessions : protein= NP_650261;, nucleotide= NM_142004;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038123.
BDGP gene expression has embryonic in situ data for CG8508: 4 pix of staining in 1 body parts.
BioGrid reports that CG8508 interacts with CG9239 .
VDRC has 3 RNAi stocks for FBgn0038123 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 02 of 4 0.00Down
Head8 22 of 4 0.10Down
Eye4 11 of 4 0.04Down
Thoracicoabdominal ganglion9 10 of 4 0.10Down
Salivary gland12 30 of 4 0.10Down
Crop6 12 of 4 0.10Down
Midgut13 00 of 4 0.10Down
Tubule6 10 of 4 0.10Down
Hindgut7 20 of 4 0.10Down
Heart5 02 of 4 0.04Down
Fat body8 30 of 4 0.07Down
Ovary4 00 of 4 0.00Down
Testis1125 334 of 4 9.40Up
Male accessory glands11 41 of 4 0.10Down
Virgin spermatheca8 22 of 4 0.07Down
Mated spermatheca8 11 of 4 0.07Down
Adult carcass15 11 of 4 0.10Down
Larval CNS5 10 of 4 0.05Down
Larval Salivary gland8 30 of 4 0.07Down
Larval midgut14 20 of 4 0.12Down
Larval tubule10 11 of 4 0.10Down
Larval hindgut6 10 of 4 0.05Down
Larval fat body115 594 of 4 1.00None
Larval trachea9 71 of 4 0.08Down
Larval carcass11 13 of 4 0.10Down
S2 cells (growing)9 12 of 4 0.08Down
Whole fly120 64 of 4

Looking for FBgn0038123. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime