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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038124 through 18771 annotations produced 1 hits



(CG14380):

Annotation Number : CG14380
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038124
Gbrowse : chr3R:9014311-9014948 (+) // 100.0 //
Probeset : 1626037_at
Accessions : protein= NP_650262;, nucleotide= NM_142005;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038124.
BioGrid reports that CG14380 interacts with CG9684 CG1660 CG6554 CG9035 Dmel CG40228 .
VDRC has 1 RNAi stocks for FBgn0038124 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 0.30Down
Head4 ± 10 of 4 0.20Down
Eye4 ± 00 of 4 0.22Down
Thoracicoabdominal ganglion9 ± 11 of 4 0.50Down
Salivary gland12 ± 40 of 4 0.64None
Crop3 ± 10 of 4 0.20Down
Midgut10 ± 10 of 4 0.50Down
Tubule4 ± 00 of 4 0.20Down
Hindgut7 ± 00 of 4 0.40Down
Heart4 ± 11 of 4 0.22Down
Fat body5 ± 30 of 4 0.30Down
Ovary6 ± 02 of 4 0.30Down
Testis240 ± 94 of 412.30Up
Male accessory glands9 ± 51 of 4 0.50None
Virgin spermatheca5 ± 10 of 4 0.30Down
Mated spermatheca4 ± 10 of 4 0.24Down
Adult carcass10 ± 10 of 4 0.50Down
Larval CNS3 ± 30 of 4 0.19Down
Larval Salivary gland8 ± 20 of 4 0.42Down
Larval midgut9 ± 30 of 4 0.49Down
Larval tubule8 ± 10 of 4 0.40Down
Larval hindgut5 ± 10 of 4 0.28Down
Larval fat body36 ± 154 of 4 1.90None
Larval trachea4 ± 22 of 4 0.24Down
Larval carcass6 ± 01 of 4 0.33Down
S2 cells (growing)9 ± 00 of 4 0.46Down
Whole fly19 ± 24 of 4

Looking for FBgn0038124. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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