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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038125 through 18771 annotations produced 1 hits



(CG8141):

Annotation Number : CG8141
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038125
Gbrowse : chr3R:9017422-9018237 (+) // 100.0 //
Probeset : 1636556_at
Accessions : protein= NP_731776;, nucleotide= NM_169496;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0038125.
BioGrid reports that CG8141 interacts with CG8383 .
VDRC has 3 RNAi stocks for FBgn0038125 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye0 00 of 4 0.03Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland9 20 of 4 0.26Down
Crop1 00 of 4 0.00Down
Midgut4 10 of 4 0.10Down
Tubule3 00 of 4 0.10Down
Hindgut4 10 of 4 0.10Down
Heart2 10 of 4 0.07Down
Fat body4 30 of 4 0.12Down
Ovary2 00 of 4 0.10Down
Testis518 54 of 413.60Up
Male accessory glands7 30 of 4 0.20Down
Virgin spermatheca3 10 of 4 0.09Down
Mated spermatheca2 00 of 4 0.06Down
Adult carcass5 20 of 4 0.20Down
Larval CNS1 00 of 4 0.03Down
Larval Salivary gland1 00 of 4 0.03Down
Larval midgut2 00 of 4 0.05Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut2 00 of 4 0.06Down
Larval fat body78 323 of 4 2.10None
Larval trachea3 31 of 4 0.10Down
Larval carcass4 00 of 4 0.12Down
S2 cells (growing)2 00 of 4 0.08Down
Whole fly38 24 of 4

Looking for FBgn0038125. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime