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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038128 through 18771 annotations produced 1 hits



Ravus (Ravus):

Annotation Number : CG15889
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038128
Gbrowse : chr3R:9088453-9089755 (-) // 100.0 //
Probeset : 1628065_at
Accessions : protein= NP_731779;, nucleotide= NM_169498;
Pathway : 0000790 // nuclear chromatin // inferred from direct assay
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0038128.
BDGP gene expression has embryonic in situ data for CG15889: 4 pix of staining in 1 body parts.
BioGrid reports that CG15889 interacts with CG15889 CG32601 .
TRiP has 1 RNAi stocks for FBgn0038128 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038128 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain72 34 of 4 1.50Up
Head33 24 of 4 0.70Down
Eye24 24 of 4 0.51Down
Thoracicoabdominal ganglion49 44 of 4 1.00None
Salivary gland23 51 of 4 0.50Down
Crop32 24 of 4 0.70Down
Midgut24 14 of 4 0.50Down
Tubule39 13 of 4 0.80Down
Hindgut35 14 of 4 0.70Down
Heart25 14 of 4 0.55Down
Fat body28 23 of 4 0.60Down
Ovary120 64 of 4 2.50Up
Testis54 14 of 4 1.10None
Male accessory glands30 23 of 4 0.60Down
Virgin spermatheca26 31 of 4 0.56Down
Mated spermatheca33 24 of 4 0.71Down
Adult carcass36 34 of 4 0.80None
Larval CNS60 34 of 4 1.27Up
Larval Salivary gland51 34 of 4 1.09None
Larval midgut34 34 of 4 0.73Down
Larval tubule68 24 of 4 1.40Up
Larval hindgut40 34 of 4 0.85None
Larval fat body47 24 of 4 1.00None
Larval trachea32 54 of 4 0.69Down
Larval carcass28 34 of 4 0.60Down
S2 cells (growing)40 04 of 4 0.85None
Whole fly47 34 of 4

Looking for FBgn0038128. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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