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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038129 through 18771 annotations produced 1 hits



(CG8449):

Annotation Number : CG8449
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038129
Gbrowse : chr3R:9094858-9097748 (-) // 100.0 //
Probeset : 1633082_at
Accessions : protein= NP_731780;, nucleotide= NM_169499;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferr
FlyMine data for FBgn0038129.
BDGP gene expression has embryonic in situ data for CG8449: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0038129 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain118 ± 74 of 4 0.80None
Head249 ± 324 of 4 1.70Up
Eye189 ± 204 of 4 1.29None
Thoracicoabdominal ganglion123 ± 124 of 4 0.80None
Salivary gland75 ± 74 of 4 0.52Down
Crop128 ± 14 of 4 0.90None
Midgut49 ± 44 of 4 0.30Down
Tubule86 ± 14 of 4 0.60Down
Hindgut91 ± 54 of 4 0.60Down
Heart398 ± 244 of 4 2.70Up
Fat body744 ± 564 of 4 5.05Up
Ovary151 ± 24 of 4 1.00None
Testis32 ± 24 of 4 0.20Down
Male accessory glands144 ± 24 of 4 1.00None
Virgin spermatheca944 ± 314 of 4 6.41Up
Mated spermatheca825 ± 664 of 4 5.60Up
Adult carcass328 ± 204 of 4 2.20Up
Larval CNS118 ± 74 of 4 0.80Down
Larval Salivary gland115 ± 14 of 4 0.78Down
Larval midgut67 ± 74 of 4 0.46Down
Larval tubule142 ± 64 of 4 1.00None
Larval hindgut109 ± 84 of 4 0.74Down
Larval fat body1877 ± 2374 of 412.70Up
Larval trachea151 ± 144 of 4 1.03None
Larval carcass105 ± 34 of 4 0.71Down
S2 cells (growing)74 ± 44 of 4 0.50Down
Whole fly147 ± 64 of 4

Looking for FBgn0038129. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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