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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038136 through 18771 annotations produced 1 hits



(CG8774):

Annotation Number : CG8774
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038136
Gbrowse : chr3R:9124568-9128056 (+) // 100.0 //
Probeset : 1631746_a_at
Accessions : protein= NP_650274; /// NP_731785;, nucleotide= NM_142017; /// NM_169502;
Interpro : 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0005515 // protein binding //
FlyMine data for FBgn0038136.
BioGrid reports that CG8774 interacts with CG9541 .
VDRC has 3 RNAi stocks for FBgn0038136 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head0 00 of 4 0.00Down
Eye3 10 of 4 0.02Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland11 50 of 4 0.06Down
Crop6 20 of 4 0.00Down
Midgut1301 494 of 4 7.10Up
Tubule27 151 of 4 0.20Down
Hindgut1309 404 of 4 7.10Up
Heart4 10 of 4 0.03Down
Fat body3 20 of 4 0.02Down
Ovary0 00 of 4 0.00Down
Testis2 10 of 4 0.00Down
Male accessory glands1607 1144 of 4 8.80Up
Virgin spermatheca2 00 of 4 0.01Down
Mated spermatheca2 10 of 4 0.01Down
Adult carcass3 00 of 4 0.00Down
Larval CNS1 00 of 4 0.01Down
Larval Salivary gland1 00 of 4 0.01Down
Larval midgut1809 1154 of 4 9.85Up
Larval tubule5 20 of 4 0.00Down
Larval hindgut920 1634 of 4 5.01Up
Larval fat body13 40 of 4 0.10Down
Larval trachea2 10 of 4 0.01Down
Larval carcass4 10 of 4 0.03Down
S2 cells (growing)1 00 of 4 0.01Down
Whole fly183 264 of 4

Looking for FBgn0038136. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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