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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038144 through 18771 annotations produced 1 hits



(CG8870):

Annotation Number : CG8870
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038144
Gbrowse : chr3R:9205861-9207065 (+) // 100.0 //
Probeset : 1632071_at
Accessions : protein= NP_731802;, nucleotide= NM_169517;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0038144.
Homophila reports that CG8870 is a close match (9e-12) to human gene F11 (NP_000119), a gene associated with Factor XI deficiency, autosomal dominant (3);Factor XI deficiency, autosomal recessive (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.40Down
Head13 ± 02 of 4 1.10None
Eye10 ± 12 of 4 0.90None
Thoracicoabdominal ganglion7 ± 20 of 4 0.60None
Salivary gland12 ± 40 of 4 1.04None
Crop25 ± 34 of 4 2.10Up
Midgut14 ± 10 of 4 1.20None
Tubule8 ± 10 of 4 0.70Down
Hindgut28 ± 24 of 4 2.40Up
Heart1 ± 00 of 4 0.12Down
Fat body5 ± 10 of 4 0.48Down
Ovary3 ± 10 of 4 0.30Down
Testis19 ± 14 of 4 1.60Up
Male accessory glands11 ± 20 of 4 1.00None
Virgin spermatheca7 ± 00 of 4 0.65None
Mated spermatheca8 ± 10 of 4 0.74None
Adult carcass16 ± 10 of 4 1.30None
Larval CNS6 ± 10 of 4 0.54None
Larval Salivary gland15 ± 20 of 4 1.26None
Larval midgut8 ± 10 of 4 0.72None
Larval tubule11 ± 20 of 4 0.90None
Larval hindgut18 ± 14 of 4 1.50Up
Larval fat body11 ± 00 of 4 1.00None
Larval trachea1 ± 20 of 4 0.14Down
Larval carcass8 ± 00 of 4 0.70None
S2 cells (growing)6 ± 00 of 4 0.56None
Whole fly12 ± 11 of 4

Looking for FBgn0038144. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime