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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038147 through 18771 annotations produced 1 hits


Annotation Number : CG14375
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038147
Gbrowse : chr3R:9214778-9220912 (-) // 100.0 //
Probeset : 1634960_at
Accessions : protein= NP_650285;, nucleotide= NM_142028;
FlyMine data for FBgn0038147.
BDGP gene expression has embryonic in situ data for CG14375: 16 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0038147 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain122 84 of 4 1.10None
Head413 734 of 4 3.70Up
Eye86 174 of 4 0.77None
Thoracicoabdominal ganglion260 164 of 4 2.30Up
Salivary gland6 31 of 4 0.05Down
Crop9 13 of 4 0.10Down
Midgut343 124 of 4 3.10Up
Tubule9 12 of 4 0.10Down
Hindgut26 14 of 4 0.20Down
Heart519 254 of 4 4.63Up
Fat body1923 1324 of 417.16Up
Ovary3 01 of 4 0.00Down
Testis2 02 of 4 0.00Down
Male accessory glands4 10 of 4 0.00Down
Virgin spermatheca1608 674 of 414.35Up
Mated spermatheca1787 1434 of 415.95Up
Adult carcass409 304 of 4 3.70Up
Larval CNS120 164 of 4 1.08None
Larval Salivary gland25 34 of 4 0.23Down
Larval midgut443 194 of 4 3.96Up
Larval tubule7 12 of 4 0.10Down
Larval hindgut36 104 of 4 0.33Down
Larval fat body1516 954 of 413.50Up
Larval trachea8 43 of 4 0.08Down
Larval carcass8 22 of 4 0.07Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly112 104 of 4

Looking for FBgn0038147. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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