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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038151 through 18771 annotations produced 1 hits



yellow-e2 (yellow-e2):

Annotation Number : CG17044
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038151
Gbrowse : chr3R:9231028-9232720 (-) // 100.0 //
Probeset : 1633841_at
Accessions : protein= NP_650289;, nucleotide= NM_142032;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038151.
BioGrid reports that CG17044 interacts with CG6703 .
VDRC has 1 RNAi stocks for FBgn0038151 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.50None
Head6 ± 10 of 4 0.80None
Eye4 ± 10 of 4 0.61None
Thoracicoabdominal ganglion7 ± 00 of 4 0.90None
Salivary gland9 ± 10 of 4 1.20None
Crop5 ± 10 of 4 0.70None
Midgut3 ± 10 of 4 0.50None
Tubule6 ± 10 of 4 0.90None
Hindgut6 ± 01 of 4 0.80None
Heart2 ± 00 of 4 0.26Down
Fat body6 ± 11 of 4 0.77None
Ovary2 ± 00 of 4 0.30Down
Testis20 ± 14 of 4 2.60Up
Male accessory glands4 ± 10 of 4 0.60None
Virgin spermatheca2 ± 10 of 4 0.36None
Mated spermatheca5 ± 10 of 4 0.73None
Adult carcass8 ± 20 of 4 1.00None
Larval CNS12 ± 24 of 4 1.63Up
Larval Salivary gland1 ± 00 of 4 0.18Down
Larval midgut2 ± 00 of 4 0.29Down
Larval tubule4 ± 10 of 4 0.50None
Larval hindgut3 ± 00 of 4 0.49Down
Larval fat body5 ± 10 of 4 0.70None
Larval trachea5 ± 12 of 4 0.68None
Larval carcass432 ± 434 of 454.61Up
S2 cells (growing)2 ± 00 of 4 0.28Down
Whole fly7 ± 10 of 4

Looking for FBgn0038151. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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