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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038156 through 18771 annotations produced 2 hits



(CG14372):

Annotation Number : S.C3R001310
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038156
Gbrowse : chr3R:9287734-9288483 (+) // 100.0 //
Probeset : 1628246_at
Accessions : protein= NP_001034052;, nucleotide= NM_001038963;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0038156.
VDRC has 1 RNAi stocks for FBgn0038156 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 14 of 438.10Up
Head9 20 of 4 7.90Up
Eye2 10 of 4 1.96None
Thoracicoabdominal ganglion19 20 of 416.60Up
Salivary gland2 00 of 4 1.77None
Crop1 00 of 4 1.60None
Midgut2 00 of 4 1.80None
Tubule1 00 of 4 1.20None
Hindgut0 00 of 4 0.70None
Heart0 00 of 4 0.83None
Fat body2 10 of 4 2.15None
Ovary0 00 of 4 0.70None
Testis0 00 of 4 0.60None
Male accessory glands3 10 of 4 2.80None
Virgin spermatheca3 00 of 4 2.66None
Mated spermatheca5 20 of 4 4.98None
Adult carcass2 00 of 4 2.30None
Larval CNS10 20 of 4 8.91Up
Larval Salivary gland1 00 of 4 1.06None
Larval midgut1 00 of 4 1.64None
Larval tubule1 00 of 4 1.00None
Larval hindgut0 00 of 4 0.74None
Larval fat body2 00 of 4 2.10Up
Larval trachea1 00 of 4 1.30None
Larval carcass0 00 of 4 0.81None
S2 cells (growing)0 00 of 4 0.64None
Whole fly1 00 of 4



(CG14372):

Annotation Number : CG14372
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038156
Gbrowse : chr3R:9281636-9283626 (+) // 100.0 //
Probeset : 1629197_at
Accessions : protein= NP_001034052;, nucleotide= NM_001038963;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0038156.
Homophila reports that CG14372 is a close match (1e-18) to human gene ARMD1;FBLN6;FIBL6;HMCN1 (NP_114141), a gene associated with {Macular degeneration, age-related, 1}, 603075 (3).
VDRC has 1 RNAi stocks for FBgn0038156 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 14 of 4 2.60Up
Head8 10 of 4 1.20None
Eye2 00 of 4 0.35Down
Thoracicoabdominal ganglion10 12 of 4 1.50None
Salivary gland16 80 of 4 2.32None
Crop8 11 of 4 1.20None
Midgut10 20 of 4 1.50None
Tubule3 10 of 4 0.50Down
Hindgut5 00 of 4 0.80None
Heart7 00 of 4 1.12None
Fat body8 42 of 4 1.27None
Ovary3 10 of 4 0.50Down
Testis2 10 of 4 0.30Down
Male accessory glands12 22 of 4 1.80None
Virgin spermatheca6 01 of 4 0.86None
Mated spermatheca8 01 of 4 1.19None
Adult carcass9 30 of 4 1.30None
Larval CNS4 02 of 4 0.68None
Larval Salivary gland9 10 of 4 1.42None
Larval midgut15 01 of 4 2.23Up
Larval tubule5 00 of 4 0.70None
Larval hindgut2 00 of 4 0.29Down
Larval fat body6 10 of 4 0.90None
Larval trachea5 20 of 4 0.74None
Larval carcass4 00 of 4 0.63None
S2 cells (growing)3 01 of 4 0.56None
Whole fly7 11 of 4

Looking for FBgn0038156. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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