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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038158 through 18771 annotations produced 1 hits



(CG14370):

Annotation Number : CG14370
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038158
Gbrowse : chr3R:9413908-9414307 (+) // 100.0 //
Probeset : 1637023_at
Accessions : protein= NP_650294;, nucleotide= NM_142037;
FlyMine data for FBgn0038158.
VDRC has 1 RNAi stocks for FBgn0038158 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head2 ± 00 of 4 0.10Down
Eye3 ± 10 of 4 0.15Down
Thoracicoabdominal ganglion5 ± 20 of 4 0.30Down
Salivary gland4 ± 10 of 4 0.19Down
Crop4 ± 10 of 4 0.20Down
Midgut10 ± 10 of 4 0.40Down
Tubule4 ± 00 of 4 0.20Down
Hindgut5 ± 10 of 4 0.30Down
Heart0 ± 00 of 4 0.03Down
Fat body3 ± 20 of 4 0.14Down
Ovary3 ± 00 of 4 0.10Down
Testis258 ± 14 of 411.50Up
Male accessory glands7 ± 20 of 4 0.30Down
Virgin spermatheca3 ± 10 of 4 0.15Down
Mated spermatheca3 ± 10 of 4 0.13Down
Adult carcass5 ± 20 of 4 0.20Down
Larval CNS3 ± 10 of 4 0.14Down
Larval Salivary gland3 ± 10 of 4 0.16Down
Larval midgut4 ± 20 of 4 0.20Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.10Down
Larval fat body36 ± 153 of 4 1.60None
Larval trachea4 ± 22 of 4 0.19Down
Larval carcass4 ± 00 of 4 0.22Down
S2 cells (growing)3 ± 00 of 4 0.15Down
Whole fly22 ± 13 of 4

Looking for FBgn0038158. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime