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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038159 through 18771 annotations produced 1 hits



(CG14369):

Annotation Number : CG14369
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038159
Gbrowse : chr3R:9417997-9418336 (-) // 100.0 //
Probeset : 1629639_at
Accessions : protein= NP_650295;, nucleotide= NM_142038;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038159.
BioGrid reports that CG14369 interacts with CG1821 CG31550 CG4220 CG6240 CG6745 .
VDRC has 3 RNAi stocks for FBgn0038159 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.60None
Head3 ± 10 of 4 0.70None
Eye6 ± 10 of 4 1.36None
Thoracicoabdominal ganglion2 ± 00 of 4 0.40None
Salivary gland9 ± 20 of 4 1.94None
Crop6 ± 00 of 4 1.40None
Midgut6 ± 10 of 4 1.40None
Tubule7 ± 01 of 4 1.60Up
Hindgut4 ± 10 of 4 0.90None
Heart7 ± 11 of 4 1.53None
Fat body7 ± 10 of 4 1.52None
Ovary2 ± 00 of 4 0.40None
Testis6 ± 32 of 4 1.30None
Male accessory glands6 ± 21 of 4 1.30None
Virgin spermatheca7 ± 00 of 4 1.56None
Mated spermatheca10 ± 11 of 4 2.11None
Adult carcass3 ± 10 of 4 0.70None
Larval CNS3 ± 10 of 4 0.68None
Larval Salivary gland11 ± 10 of 4 2.39Up
Larval midgut3 ± 10 of 4 0.80None
Larval tubule7 ± 11 of 4 1.60None
Larval hindgut4 ± 10 of 4 0.92None
Larval fat body12 ± 32 of 4 2.50None
Larval trachea8 ± 22 of 4 1.79None
Larval carcass11 ± 42 of 4 2.39None
S2 cells (growing)4 ± 10 of 4 0.84None
Whole fly4 ± 11 of 4

Looking for FBgn0038159. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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