FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038161 through 18771 annotations produced 1 hits

(CG9269):

Annotation Number : CG9269
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038161
Gbrowse : chr3R:9441725-9442166 (+) // 100.0 //
Probeset : 1634998_at
Accessions : protein= NP_650297;, nucleotide= NM_142040;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038161.
VDRC has 1 RNAi stocks for FBgn0038161 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	0.90	None
Head	6 ± 1	2 of 4	1.60	None
Eye	0 ± 0	0 of 4	0.25	Down
Thoracicoabdominal ganglion	5 ± 0	0 of 4	1.60	None
Salivary gland	24 ± 7	1 of 4	6.57	None
Crop	9 ± 3	2 of 4	2.60	None
Midgut	4 ± 1	0 of 4	1.10	None
Tubule	11 ± 0	1 of 4	3.10	Up
Hindgut	5 ± 0	1 of 4	1.40	None
Heart	2 ± 1	0 of 4	0.54	None
Fat body	14 ± 9	2 of 4	3.84	None
Ovary	4 ± 1	2 of 4	1.20	None
Testis	3 ± 0	0 of 4	1.00	None
Male accessory glands	11 ± 4	0 of 4	3.00	None
Virgin spermatheca	17 ± 2	3 of 4	4.52	Up
Mated spermatheca	15 ± 3	2 of 4	4.00	Up
Adult carcass	7 ± 3	0 of 4	1.90	None
Larval CNS	6 ± 4	2 of 4	1.73	None
Larval Salivary gland	6 ± 1	0 of 4	1.85	None
Larval midgut	6 ± 2	0 of 4	1.73	None
Larval tubule	15 ± 4	4 of 4	4.00	None
Larval hindgut	1404 ± 136	4 of 4	374.40	Up
Larval fat body	9 ± 2	0 of 4	2.60	None
Larval trachea	1 ± 1	0 of 4	0.35	None
Larval carcass	71 ± 11	4 of 4	19.07	Up
S2 cells (growing)	4 ± 1	0 of 4	1.14	None
Whole fly	3 ± 0	0 of 4

Looking for FBgn0038161. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720