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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038163 through 18771 annotations produced 1 hits


(CG10841):

Annotation Number : CG10841
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038163
Gbrowse : chr3R:9457663-9460590 (+) // 100.0 //
Probeset : 1637944_at
Accessions : protein= NP_650299;, nucleotide= NM_142042;
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation
FlyMine data for FBgn0038163.
BDGP gene expression has embryonic in situ data for CG10841: 6 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0038163 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion4 ± 00 of 4 0.00Down
Salivary gland15 ± 60 of 4 0.18Down
Crop4 ± 10 of 4 0.10Down
Midgut6 ± 10 of 4 0.10Down
Tubule5 ± 00 of 4 0.10Down
Hindgut4 ± 10 of 4 0.00Down
Heart3 ± 10 of 4 0.04Down
Fat body10 ± 41 of 4 0.12Down
Ovary1 ± 00 of 4 0.00Down
Testis997 ± 314 of 411.30Up
Male accessory glands121 ± 184 of 4 1.40None
Virgin spermatheca8 ± 03 of 4 0.09Down
Mated spermatheca7 ± 02 of 4 0.08Down
Adult carcass4 ± 10 of 4 0.10Down
Larval CNS4 ± 11 of 4 0.05Down
Larval Salivary gland5 ± 21 of 4 0.06Down
Larval midgut3 ± 10 of 4 0.04Down
Larval tubule6 ± 01 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.03Down
Larval fat body115 ± 623 of 4 1.30None
Larval trachea3 ± 41 of 4 0.04Down
Larval carcass3 ± 00 of 4 0.04Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly88 ± 74 of 4

Looking for FBgn0038163. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime