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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038170 through 18771 annotations produced 1 hits



(CG14367):

Annotation Number : CG14367
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038170
Gbrowse : chr3R:9519774-9521484 (+) // 100.0 //
Probeset : 1638710_at
Accessions : protein= NP_650305;, nucleotide= NM_142048;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038170.
BDGP gene expression has embryonic in situ data for CG14367: 4 pix of staining in 1 body parts.
BioGrid reports that CG14367 interacts with CG1664 CG2950 CG14506 CG7088 .
VDRC has 1 RNAi stocks for FBgn0038170 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 ± 14 of 4 1.20None
Head32 ± 34 of 4 1.70Up
Eye50 ± 54 of 4 2.61Up
Thoracicoabdominal ganglion34 ± 44 of 4 1.80Up
Salivary gland20 ± 11 of 4 1.07None
Crop13 ± 22 of 4 0.70None
Midgut14 ± 01 of 4 0.70None
Tubule12 ± 02 of 4 0.70Down
Hindgut16 ± 12 of 4 0.80None
Heart14 ± 04 of 4 0.74None
Fat body22 ± 52 of 4 1.17None
Ovary11 ± 13 of 4 0.60None
Testis29 ± 44 of 4 1.50None
Male accessory glands20 ± 13 of 4 1.00None
Virgin spermatheca17 ± 34 of 4 0.92None
Mated spermatheca14 ± 02 of 4 0.76None
Adult carcass26 ± 33 of 4 1.40None
Larval CNS14 ± 24 of 4 0.73None
Larval Salivary gland8 ± 10 of 4 0.44Down
Larval midgut10 ± 01 of 4 0.55None
Larval tubule15 ± 14 of 4 0.80None
Larval hindgut6 ± 11 of 4 0.35Down
Larval fat body15 ± 11 of 4 0.80None
Larval trachea10 ± 41 of 4 0.55None
Larval carcass14 ± 13 of 4 0.76None
S2 cells (growing)5 ± 11 of 4 0.28Down
Whole fly19 ± 33 of 4

Looking for FBgn0038170. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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