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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038180 through 18771 annotations produced 1 hits



chitin-binding peritrophin-A (Cht5):

Annotation Number : CG9307
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038180
Gbrowse : chr3R:9593272-9596454 (+) // 100.0 //
Probeset : 1624036_at
Accessions : protein= NP_650314;, nucleotide= NM_142057;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0038180.
BDGP gene expression has embryonic in situ data for CG9307: 14 pix of staining in 3 body parts.
Homophila reports that CG9307 is a close match (2e-61) to human gene ASRT7;CHI3L1;GP39;YKL40 (NP_001267), a gene associated with {Asthma-related traits, susceptibility to, 7}, 611960 (3);{Schizophrenia, susceptiblity to}, 181500 (3).
VDRC has 3 RNAi stocks for FBgn0038180 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 11 of 4 0.80None
Head22 ± 21 of 4 2.70Up
Eye28 ± 54 of 4 3.42Up
Thoracicoabdominal ganglion3 ± 10 of 4 0.40None
Salivary gland13 ± 30 of 4 1.56None
Crop6 ± 10 of 4 0.70None
Midgut30 ± 24 of 4 3.70Up
Tubule22 ± 43 of 4 2.70Up
Hindgut3 ± 10 of 4 0.50None
Heart3 ± 10 of 4 0.37None
Fat body2 ± 10 of 4 0.25None
Ovary0 ± 00 of 4 0.10Down
Testis4 ± 00 of 4 0.50None
Male accessory glands2 ± 00 of 4 0.20None
Virgin spermatheca2 ± 00 of 4 0.26None
Mated spermatheca5 ± 20 of 4 0.67None
Adult carcass23 ± 22 of 4 2.90Up
Larval CNS7 ± 22 of 4 0.92None
Larval Salivary gland7 ± 10 of 4 0.94None
Larval midgut20 ± 53 of 4 2.48None
Larval tubule11 ± 22 of 4 1.30None
Larval hindgut28 ± 34 of 4 3.41Up
Larval fat body8 ± 10 of 4 1.10None
Larval trachea621 ± 1794 of 475.12Up
Larval carcass377 ± 624 of 445.63Up
S2 cells (growing)2 ± 00 of 4 0.31None
Whole fly8 ± 20 of 4

Looking for FBgn0038180. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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