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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038183 through 18771 annotations produced 1 hits



(CG9286):

Annotation Number : CG9286
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038183
Gbrowse : chr3R:9606713-9607804 (+) // 99.59 //
Probeset : 1629209_at
Accessions : protein= NP_650317;, nucleotide= NM_142060;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038183.
VDRC has 2 RNAi stocks for FBgn0038183 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain89 ± 14 of 4 0.80None
Head114 ± 34 of 4 1.00None
Eye123 ± 54 of 4 1.06None
Thoracicoabdominal ganglion103 ± 34 of 4 0.90None
Salivary gland122 ± 34 of 4 1.05None
Crop97 ± 84 of 4 0.80None
Midgut94 ± 24 of 4 0.80None
Tubule76 ± 94 of 4 0.70Down
Hindgut79 ± 24 of 4 0.70None
Heart121 ± 74 of 4 1.04None
Fat body169 ± 204 of 4 1.45Up
Ovary147 ± 64 of 4 1.30None
Testis57 ± 14 of 4 0.50Down
Male accessory glands180 ± 154 of 4 1.50Up
Virgin spermatheca137 ± 94 of 4 1.18None
Mated spermatheca151 ± 74 of 4 1.29None
Adult carcass110 ± 104 of 4 0.90None
Larval CNS274 ± 144 of 4 2.35Up
Larval Salivary gland156 ± 144 of 4 1.34None
Larval midgut97 ± 64 of 4 0.83None
Larval tubule71 ± 14 of 4 0.60None
Larval hindgut112 ± 164 of 4 0.96None
Larval fat body95 ± 64 of 4 0.80None
Larval trachea255 ± 324 of 4 2.19Up
Larval carcass153 ± 334 of 4 1.32None
S2 cells (growing)109 ± 14 of 4 0.94None
Whole fly116 ± 144 of 4

Looking for FBgn0038183. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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