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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038190 through 18771 annotations produced 1 hits



(CG9926):

Annotation Number : CG9926
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038190
Gbrowse : chr3R:9775945-9776860 (-) // 100.0 //
Probeset : 1628127_at
Accessions : protein= NP_650323;, nucleotide= NM_142066;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038190.
VDRC has 1 RNAi stocks for FBgn0038190 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 10 of 4 0.00Down
Salivary gland5 ± 40 of 4 0.07Down
Crop3 ± 10 of 4 0.00Down
Midgut4 ± 10 of 4 0.10Down
Tubule3 ± 10 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.02Down
Fat body5 ± 10 of 4 0.07Down
Ovary201 ± 44 of 4 2.60Up
Testis36 ± 14 of 4 0.50Down
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca9 ± 20 of 4 0.12Down
Mated spermatheca10 ± 31 of 4 0.13Down
Adult carcass6 ± 10 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.02Down
Larval Salivary gland3 ± 00 of 4 0.05Down
Larval midgut4 ± 10 of 4 0.05Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut1 ± 10 of 4 0.02Down
Larval fat body11 ± 32 of 4 0.10Down
Larval trachea1 ± 00 of 4 0.02Down
Larval carcass1 ± 00 of 4 0.02Down
S2 cells (growing)3 ± 10 of 4 0.04Down
Whole fly78 ± 54 of 4

Looking for FBgn0038190. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime