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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038194 through 18771 annotations produced 1 hits



Cyp6d5 (Cyp6d5):

Annotation Number : CG3050
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038194
Gbrowse : chr3R:9854951-9857206 (+) // 100.0 //
Probeset : 1638562_a_at
Accessions : protein= NP_650327;, nucleotide= NM_142070;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0038194.
BDGP gene expression has embryonic in situ data for Cyp6d5: 23 pix of staining in 8 body parts.
Homophila reports that CG3050 is a close match (8e-11) to human gene CPD6;CYP2D6;P450DB1 (NP_001020332), a gene associated with Codeine sensitivity (3);Debrisoquine sensitivity (3);{?Parkinsonism, susceptibility to} (1).
VDRC has 3 RNAi stocks for FBgn0038194 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain126 ± 124 of 4 0.10Down
Head2336 ± 954 of 4 2.30Up
Eye879 ± 814 of 4 0.86None
Thoracicoabdominal ganglion60 ± 64 of 4 0.10Down
Salivary gland1965 ± 1754 of 4 1.92Up
Crop5919 ± 3264 of 4 5.80Up
Midgut4875 ± 1874 of 4 4.80Up
Tubule3147 ± 1774 of 4 3.10Up
Hindgut2464 ± 434 of 4 2.40Up
Heart2735 ± 1364 of 4 2.68Up
Fat body3416 ± 1814 of 4 3.35Up
Ovary4 ± 10 of 4 0.00Down
Testis866 ± 164 of 4 0.80None
Male accessory glands1321 ± 824 of 4 1.30Up
Virgin spermatheca3577 ± 1214 of 4 3.50Up
Mated spermatheca2026 ± 1934 of 4 1.98Up
Adult carcass3173 ± 1154 of 4 3.10Up
Larval CNS8 ± 40 of 4 0.01Down
Larval Salivary gland29 ± 51 of 4 0.03Down
Larval midgut2184 ± 3774 of 4 2.14None
Larval tubule239 ± 264 of 4 0.20Down
Larval hindgut365 ± 664 of 4 0.36Down
Larval fat body4041 ± 5574 of 4 4.00Up
Larval trachea25 ± 163 of 4 0.03Down
Larval carcass248 ± 684 of 4 0.24Down
S2 cells (growing)24 ± 22 of 4 0.02Down
Whole fly1021 ± 534 of 4

Looking for FBgn0038194. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime