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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038198 through 18771 annotations produced 1 hits

CG3153 (Npc2b):

Annotation Number : CG3153
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038198
Gbrowse : chr3R:9915244-9918149 (+) // 100.0 //
Probeset : 1641065_s_at
Accessions : protein= NP_650331; /// NP_731880;, nucleotide= NM_142074; /// NM_169568;
FlyMine data for FBgn0038198.
BDGP gene expression has embryonic in situ data for CG3153: 18 pix of staining in 8 body parts.
TRiP has 1 RNAi stocks for FBgn0038198 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038198 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain146 54 of 4 0.50Down
Head1314 854 of 4 4.50Up
Eye343 164 of 4 1.18Up
Thoracicoabdominal ganglion184 74 of 4 0.60Down
Salivary gland107 104 of 4 0.37Down
Crop2454 994 of 4 8.40Up
Midgut92 34 of 4 0.30Down
Tubule37 14 of 4 0.10Down
Hindgut3086 874 of 410.60Up
Heart111 94 of 4 0.38Down
Fat body132 354 of 4 0.45Down
Ovary8 14 of 4 0.00Down
Testis50 04 of 4 0.20Down
Male accessory glands763 2054 of 4 2.60None
Virgin spermatheca73 34 of 4 0.25Down
Mated spermatheca76 84 of 4 0.26Down
Adult carcass864 404 of 4 3.00Up
Larval CNS99 94 of 4 0.34Down
Larval Salivary gland6 10 of 4 0.02Down
Larval midgut51 24 of 4 0.17Down
Larval tubule13 24 of 4 0.00Down
Larval hindgut742 374 of 4 2.54Up
Larval fat body20 33 of 4 0.10Down
Larval trachea1676 1144 of 4 5.75Up
Larval carcass331 144 of 4 1.13None
S2 cells (growing)76 94 of 4 0.26Down
Whole fly291 104 of 4

Looking for FBgn0038198. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime