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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038203 through 18771 annotations produced 1 hits



Odorant receptor 88a (Or88a):

Annotation Number : CG14360
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038203
Gbrowse : chr3R:9935166-9936545 (+) // 100.0 //
Probeset : 1631562_at
Accessions : protein= NP_524348;, nucleotide= NM_079624;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0038203.
TRiP has 1 RNAi stocks for FBgn0038203 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038203 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.70None
Head12 ± 23 of 4 3.10Up
Eye2 ± 00 of 4 0.62None
Thoracicoabdominal ganglion6 ± 11 of 4 1.50None
Salivary gland9 ± 30 of 4 2.40None
Crop6 ± 10 of 4 1.50None
Midgut2 ± 10 of 4 0.70None
Tubule6 ± 00 of 4 1.60Up
Hindgut4 ± 00 of 4 1.00None
Heart4 ± 10 of 4 1.09None
Fat body10 ± 20 of 4 2.50Up
Ovary1 ± 00 of 4 0.40Down
Testis2 ± 10 of 4 0.50None
Male accessory glands3 ± 10 of 4 0.70None
Virgin spermatheca6 ± 10 of 4 1.50None
Mated spermatheca4 ± 10 of 4 1.08None
Adult carcass4 ± 10 of 4 1.20None
Larval CNS3 ± 10 of 4 0.88None
Larval Salivary gland4 ± 10 of 4 1.12None
Larval midgut5 ± 21 of 4 1.28None
Larval tubule6 ± 10 of 4 1.50None
Larval hindgut3 ± 10 of 4 0.83None
Larval fat body4 ± 11 of 4 1.10None
Larval trachea2 ± 10 of 4 0.58None
Larval carcass2 ± 10 of 4 0.67None
S2 cells (growing)3 ± 10 of 4 0.74None
Whole fly4 ± 01 of 4

Looking for FBgn0038203. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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