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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038206 through 18771 annotations produced 1 hits



twinfillin (twf):

Annotation Number : CG3172
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038206
Gbrowse : chr3R:9948379-9950199 (+) // 100.0 //
Probeset : 1627488_at
Accessions : protein= NP_650338;, nucleotide= NM_142081;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /
Interpro : 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // non-traceable author sta
FlyMine data for FBgn0038206.
BDGP gene expression has embryonic in situ data for twf: 4 pix of staining in 1 body parts.
BioGrid reports that CG3172 interacts with CG4254 .
TRiP has 1 RNAi stocks for FBgn0038206 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038206 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain251 ± 54 of 4 0.80Down
Head178 ± 84 of 4 0.60Down
Eye253 ± 114 of 4 0.81Down
Thoracicoabdominal ganglion203 ± 34 of 4 0.60Down
Salivary gland269 ± 34 of 4 0.86Down
Crop241 ± 64 of 4 0.80Down
Midgut465 ± 194 of 4 1.50Up
Tubule470 ± 84 of 4 1.50Up
Hindgut277 ± 84 of 4 0.90Down
Heart236 ± 84 of 4 0.75Down
Fat body136 ± 124 of 4 0.44Down
Ovary528 ± 144 of 4 1.70Up
Testis324 ± 124 of 4 1.00None
Male accessory glands216 ± 104 of 4 0.70Down
Virgin spermatheca290 ± 114 of 4 0.93None
Mated spermatheca287 ± 114 of 4 0.92None
Adult carcass136 ± 44 of 4 0.40Down
Larval CNS267 ± 134 of 4 0.85Down
Larval Salivary gland610 ± 334 of 4 1.95Up
Larval midgut717 ± 244 of 4 2.29Up
Larval tubule690 ± 164 of 4 2.20Up
Larval hindgut450 ± 144 of 4 1.44Up
Larval fat body371 ± 154 of 4 1.20Up
Larval trachea283 ± 334 of 4 0.90None
Larval carcass548 ± 284 of 4 1.75Up
S2 cells (growing)559 ± 174 of 4 1.78Up
Whole fly313 ± 94 of 4

Looking for FBgn0038206. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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