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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038208 through 18771 annotations produced 1 hits


(CG14355):

Annotation Number : CG14355
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038208
Gbrowse : chr3R:9974215-9977721 (-) // 100.0 //
Probeset : 1641100_at
Accessions : protein= NP_650340;, nucleotide= NM_142083;
FlyMine data for FBgn0038208.
BDGP gene expression has embryonic in situ data for CG14355: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0038208 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland17 ± 50 of 4 0.10Down
Crop1 ± 00 of 4 0.00Down
Midgut6 ± 20 of 4 0.00Down
Tubule4 ± 00 of 4 0.00Down
Hindgut4 ± 20 of 4 0.00Down
Heart0 ± 00 of 4 0.00Down
Fat body4 ± 40 of 4 0.03Down
Ovary4 ± 10 of 4 0.00Down
Testis1805 ± 434 of 410.80Up
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.01Down
Mated spermatheca2 ± 00 of 4 0.01Down
Adult carcass8 ± 20 of 4 0.00Down
Larval CNS3 ± 30 of 4 0.02Down
Larval Salivary gland3 ± 00 of 4 0.02Down
Larval midgut7 ± 30 of 4 0.04Down
Larval tubule5 ± 10 of 4 0.00Down
Larval hindgut6 ± 10 of 4 0.04Down
Larval fat body170 ± 864 of 4 1.00None
Larval trachea12 ± 191 of 4 0.07Down
Larval carcass60 ± 42 of 4 0.36Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly166 ± 104 of 4

Looking for FBgn0038208. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime