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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038211 through 18771 annotations produced 1 hits


Annotation Number : CG9649
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038211
Gbrowse : chr3R:10041180-10043588 (-) // 99.65 //
Probeset : 1629789_at
Accessions : protein= NP_650343;, nucleotide= NM_142086;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004175 // endopeptidase activity // non-tracea
FlyMine data for FBgn0038211.
BDGP gene expression has embryonic in situ data for CG9649: 4 pix of staining in 1 body parts.
Homophila reports that CG9649 is a close match (1e-11) to human gene C1S (NP_958850), a gene associated with C1r/C1s deficiency, combined (1);C1s deficiency, isolated (3).
VDRC has 2 RNAi stocks for FBgn0038211 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 14 of 4 0.20Down
Head311 224 of 4 3.50Up
Eye261 254 of 4 2.95Up
Thoracicoabdominal ganglion16 24 of 4 0.20Down
Salivary gland14 22 of 4 0.16Down
Crop567 194 of 4 6.40Up
Midgut6 00 of 4 0.10Down
Tubule9 12 of 4 0.10Down
Hindgut73 34 of 4 0.80Down
Heart479 254 of 4 5.41Up
Fat body1117 934 of 412.60Up
Ovary2 00 of 4 0.00Down
Testis3 00 of 4 0.00Down
Male accessory glands4 00 of 4 0.10Down
Virgin spermatheca1067 554 of 412.05Up
Mated spermatheca821 664 of 4 9.27Up
Adult carcass597 344 of 4 6.70Up
Larval CNS3 10 of 4 0.03Down
Larval Salivary gland7 01 of 4 0.08Down
Larval midgut7 00 of 4 0.08Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut4 12 of 4 0.06Down
Larval fat body4 10 of 4 0.00Down
Larval trachea7 71 of 4 0.08Down
Larval carcass9 14 of 4 0.11Down
S2 cells (growing)2 00 of 4 0.03Down
Whole fly88 34 of 4

Looking for FBgn0038211. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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