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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038213 through 18771 annotations produced 1 hits


(CG9624):

Annotation Number : CG9624
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038213
Gbrowse : chr3R:10053921-10054882 (-) // 100.0 //
Probeset : 1630251_at
Accessions : protein= NP_650346;, nucleotide= NM_142089;
Interpro : 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004743 // pyruvate kinase activity // infer
FlyMine data for FBgn0038213.
VDRC has 3 RNAi stocks for FBgn0038213 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.03Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland5 ± 30 of 4 0.07Down
Crop4 ± 00 of 4 0.10Down
Midgut0 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut3 ± 10 of 4 0.00Down
Heart5 ± 11 of 4 0.08Down
Fat body8 ± 40 of 4 0.10Down
Ovary1 ± 00 of 4 0.00Down
Testis1104 ± 294 of 414.20Up
Male accessory glands2 ± 10 of 4 0.00Down
Virgin spermatheca12 ± 11 of 4 0.16Down
Mated spermatheca14 ± 12 of 4 0.19Down
Adult carcass3 ± 10 of 4 0.00Down
Larval CNS3 ± 10 of 4 0.04Down
Larval Salivary gland3 ± 10 of 4 0.04Down
Larval midgut1 ± 00 of 4 0.01Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.04Down
Larval fat body97 ± 454 of 4 1.20None
Larval trachea3 ± 31 of 4 0.05Down
Larval carcass0 ± 00 of 4 0.01Down
S2 cells (growing)2 ± 00 of 4 0.04Down
Whole fly78 ± 84 of 4

Looking for FBgn0038213. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime