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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038218 through 18771 annotations produced 1 hits



(CG14841):

Annotation Number : CG14841
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038218
Gbrowse : chr3R:10087112-10088140 (-) // 100.0 //
Probeset : 1623377_at
Accessions : protein= NP_650350;, nucleotide= NM_142093;
FlyMine data for FBgn0038218.
BDGP gene expression has embryonic in situ data for CG14841: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0038218 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.20Down
Head1 00 of 4 0.10Down
Eye5 11 of 4 0.37Down
Thoracicoabdominal ganglion4 10 of 4 0.30Down
Salivary gland2 00 of 4 0.16Down
Crop4 10 of 4 0.30Down
Midgut2 00 of 4 0.10Down
Tubule2 00 of 4 0.10Down
Hindgut2 10 of 4 0.10Down
Heart4 10 of 4 0.30Down
Fat body1 00 of 4 0.12Down
Ovary3 00 of 4 0.20Down
Testis152 64 of 410.20Up
Male accessory glands4 10 of 4 0.30Down
Virgin spermatheca1 00 of 4 0.08Down
Mated spermatheca1 00 of 4 0.07Down
Adult carcass3 10 of 4 0.30Down
Larval CNS1 10 of 4 0.13Down
Larval Salivary gland3 00 of 4 0.21Down
Larval midgut1 00 of 4 0.09Down
Larval tubule2 10 of 4 0.20Down
Larval hindgut1 00 of 4 0.09Down
Larval fat body28 142 of 4 1.90None
Larval trachea5 42 of 4 0.39Down
Larval carcass3 00 of 4 0.26Down
S2 cells (growing)2 00 of 4 0.18Down
Whole fly15 14 of 4

Looking for FBgn0038218. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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