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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038220 through 18771 annotations produced 1 hits



(CG12207):

Annotation Number : CG12207
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038220
Gbrowse : chr3R:10114793-10127995 (+) // 100.0 //
Probeset : 1628761_s_at
Accessions : protein= NP_650352; /// NP_650353; /// NP_731894; /// NP_731895;, nucleotide= NM_142095; /// NM_142096; /// NM_169572; /// NM_169573;
FlyMine data for FBgn0038220.
BDGP gene expression has embryonic in situ data for CG12207: 14 pix of staining in 7 body parts.
VDRC has 2 RNAi stocks for FBgn0038220 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain341 ± 64 of 4 1.40Up
Head259 ± 304 of 4 1.10None
Eye316 ± 144 of 4 1.31Up
Thoracicoabdominal ganglion242 ± 164 of 4 1.00None
Salivary gland493 ± 154 of 4 2.04Up
Crop232 ± 94 of 4 1.00None
Midgut697 ± 44 of 4 2.90Up
Tubule1297 ± 434 of 4 5.40Up
Hindgut327 ± 44 of 4 1.40Up
Heart92 ± 34 of 4 0.38Down
Fat body90 ± 84 of 4 0.37Down
Ovary407 ± 74 of 4 1.70Up
Testis136 ± 64 of 4 0.60Down
Male accessory glands149 ± 24 of 4 0.60Down
Virgin spermatheca100 ± 64 of 4 0.41Down
Mated spermatheca97 ± 44 of 4 0.40Down
Adult carcass242 ± 314 of 4 1.00None
Larval CNS173 ± 214 of 4 0.72Down
Larval Salivary gland183 ± 134 of 4 0.76None
Larval midgut999 ± 374 of 4 4.13Up
Larval tubule703 ± 184 of 4 2.90Up
Larval hindgut647 ± 854 of 4 2.68Up
Larval fat body254 ± 184 of 4 1.10None
Larval trachea230 ± 114 of 4 0.95None
Larval carcass221 ± 234 of 4 0.92None
S2 cells (growing)439 ± 74 of 4 1.82Up
Whole fly241 ± 194 of 4

Looking for FBgn0038220. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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