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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038223 through 18771 annotations produced 1 hits



(CG8538):

Annotation Number : CG8538
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038223
Gbrowse : chr3R:10147100-10152404 (-) // 100.0 //
Probeset : 1637942_at
Accessions : protein= NP_650355;, nucleotide= NM_142098;
FlyMine data for FBgn0038223.
VDRC has 3 RNAi stocks for FBgn0038223 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain61 ± 24 of 4 2.20Up
Head20 ± 14 of 4 0.70None
Eye15 ± 24 of 4 0.55Down
Thoracicoabdominal ganglion41 ± 34 of 4 1.50Up
Salivary gland56 ± 54 of 4 1.97Up
Crop26 ± 14 of 4 0.90None
Midgut22 ± 13 of 4 0.80None
Tubule18 ± 13 of 4 0.60Down
Hindgut25 ± 14 of 4 0.90None
Heart10 ± 13 of 4 0.37Down
Fat body15 ± 22 of 4 0.54Down
Ovary44 ± 14 of 4 1.60Up
Testis142 ± 14 of 4 5.00Up
Male accessory glands29 ± 24 of 4 1.00None
Virgin spermatheca7 ± 11 of 4 0.27Down
Mated spermatheca13 ± 13 of 4 0.46Down
Adult carcass16 ± 51 of 4 0.60None
Larval CNS28 ± 24 of 4 0.99None
Larval Salivary gland39 ± 104 of 4 1.38None
Larval midgut16 ± 24 of 4 0.59Down
Larval tubule34 ± 14 of 4 1.20None
Larval hindgut21 ± 24 of 4 0.75None
Larval fat body34 ± 83 of 4 1.20None
Larval trachea19 ± 14 of 4 0.68None
Larval carcass20 ± 23 of 4 0.71None
S2 cells (growing)52 ± 34 of 4 1.83Up
Whole fly28 ± 34 of 4

Looking for FBgn0038223. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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