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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038224 through 18771 annotations produced 1 hits



F0/F1 ATP synthase E /// (CG3321 /// DyakGE24232):

Annotation Number : CG3321
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038224
Gbrowse : chr3R:10152745-10153473 (+) // 100.0 //
Probeset : 1639477_s_at
Accessions : protein= NP_650356; /// NP_731903;, nucleotide= NM_142099; /// NM_169579;
Pathway : "0000276 // mitochondrial proton-transporting ATP synthase complex
Interpro : coupling factor F(o) // inferred from sequence or structural similarity /// 0000276 // mitochondrial proton-transportin
FlyMine data for FBgn0038224.
BioGrid reports that CG3321 interacts with CG8614 .
VDRC has 1 RNAi stocks for FBgn0038224 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1823 304 of 4 0.80Down
Head2744 474 of 4 1.20Up
Eye3641 814 of 4 1.54Up
Thoracicoabdominal ganglion2378 454 of 4 1.00None
Salivary gland5182 1834 of 4 2.19Up
Crop2535 1214 of 4 1.10None
Midgut2544 774 of 4 1.10None
Tubule2655 704 of 4 1.10Up
Hindgut3306 1004 of 4 1.40Up
Heart3851 1464 of 4 1.63Up
Fat body3443 2944 of 4 1.45Up
Ovary1552 134 of 4 0.70Down
Testis1218 194 of 4 0.50Down
Male accessory glands2118 354 of 4 0.90None
Virgin spermatheca2606 1504 of 4 1.10None
Mated spermatheca2428 374 of 4 1.03None
Adult carcass4671 2894 of 4 2.00Up
Larval CNS1596 534 of 4 0.67Down
Larval Salivary gland2863 974 of 4 1.21Up
Larval midgut3012 314 of 4 1.27Up
Larval tubule2331 2034 of 4 1.00None
Larval hindgut3167 684 of 4 1.34Up
Larval fat body1245 654 of 4 0.50Down
Larval trachea2186 454 of 4 0.92None
Larval carcass3050 2684 of 4 1.29None
S2 cells (growing)1463 184 of 4 0.62Down
Whole fly2368 1234 of 4

Looking for FBgn0038224. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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