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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038225 through 18771 annotations produced 1 hits


scotti (soti):

Annotation Number : CG8489
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038225
Gbrowse : chr3R:10206104-10207421 (-) // 100.0 //
Probeset : 1623783_at
Accessions : protein= NP_650358;, nucleotide= NM_142101;
FlyMine data for FBgn0038225.
BDGP gene expression has embryonic in situ data for CG8489: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0038225 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye2 ± 10 of 4 0.04Down
Thoracicoabdominal ganglion9 ± 20 of 4 0.10Down
Salivary gland8 ± 40 of 4 0.10Down
Crop5 ± 20 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule4 ± 00 of 4 0.10Down
Hindgut3 ± 10 of 4 0.00Down
Heart1 ± 00 of 4 0.02Down
Fat body9 ± 50 of 4 0.13Down
Ovary2 ± 00 of 4 0.00Down
Testis143 ± 174 of 4 1.80Up
Male accessory glands8 ± 40 of 4 0.10Down
Virgin spermatheca8 ± 32 of 4 0.11Down
Mated spermatheca7 ± 11 of 4 0.10Down
Adult carcass8 ± 30 of 4 0.10Down
Larval CNS6 ± 41 of 4 0.08Down
Larval Salivary gland5 ± 10 of 4 0.07Down
Larval midgut2 ± 10 of 4 0.03Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut3 ± 00 of 4 0.04Down
Larval fat body94 ± 174 of 4 1.20None
Larval trachea11 ± 61 of 4 0.15Down
Larval carcass3 ± 20 of 4 0.05Down
S2 cells (growing)2 ± 10 of 4 0.03Down
Whole fly78 ± 94 of 4

Looking for FBgn0038225. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime