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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038235 through 18771 annotations produced 1 hits



(CG8461):

Annotation Number : CG8461
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038235
Gbrowse : chr3R:10338349-10339328 (-) // 100.0 //
Probeset : 1637951_at
Accessions : protein= NP_650367;, nucleotide= NM_142110;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038235.
BDGP gene expression has embryonic in situ data for CG8461: 10 pix of staining in 8 body parts.
VDRC has 2 RNAi stocks for FBgn0038235 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain76 ± 34 of 4 1.00None
Head51 ± 34 of 4 0.70Down
Eye58 ± 14 of 4 0.78None
Thoracicoabdominal ganglion68 ± 24 of 4 0.90None
Salivary gland99 ± 14 of 4 1.31Up
Crop43 ± 14 of 4 0.60Down
Midgut39 ± 14 of 4 0.50Down
Tubule42 ± 34 of 4 0.60Down
Hindgut38 ± 04 of 4 0.50Down
Heart43 ± 34 of 4 0.58Down
Fat body51 ± 54 of 4 0.68Down
Ovary149 ± 34 of 4 2.00Up
Testis59 ± 14 of 4 0.80None
Male accessory glands75 ± 54 of 4 1.00None
Virgin spermatheca75 ± 54 of 4 0.99None
Mated spermatheca94 ± 54 of 4 1.25None
Adult carcass47 ± 44 of 4 0.60Down
Larval CNS94 ± 74 of 4 1.25Up
Larval Salivary gland40 ± 34 of 4 0.53Down
Larval midgut30 ± 24 of 4 0.41Down
Larval tubule40 ± 04 of 4 0.50Down
Larval hindgut42 ± 54 of 4 0.55Down
Larval fat body52 ± 24 of 4 0.70Down
Larval trachea86 ± 34 of 4 1.14None
Larval carcass42 ± 54 of 4 0.57Down
S2 cells (growing)55 ± 34 of 4 0.73Down
Whole fly75 ± 64 of 4

Looking for FBgn0038235. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime