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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038237 through 18771 annotations produced 1 hits



chr3R:10339622-10355552 (-) // 99.81 // (Phosphodiesterase 6):

Annotation Number : CG8279
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1629322_at
Accessions : protein= , nucleotide= NP_650369;
Pathway : "0007165 // signal transduction // inferred from electronic annotation /// 0032240 // negative regulation of nucleobase
Interpro : nucleoside
FlyMine data for full length.
Homophila reports that CG8279 is a close match (1e-18) to human gene PDE8B;PPNAD3 (NP_003710), a gene associated with Pigmented nodular adrenocortical disease, primary, 3 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain682 ± 94 of 4 7.30Up
Head231 ± 74 of 4 2.50Up
Eye85 ± 44 of 4 0.91None
Thoracicoabdominal ganglion837 ± 284 of 4 8.90Up
Salivary gland209 ± 224 of 4 2.23Up
Crop74 ± 44 of 4 0.80None
Midgut44 ± 14 of 4 0.50Down
Tubule201 ± 154 of 4 2.10Up
Hindgut194 ± 74 of 4 2.10Up
Heart125 ± 84 of 4 1.34Up
Fat body289 ± 214 of 4 3.08Up
Ovary11 ± 14 of 4 0.10Down
Testis5 ± 01 of 4 0.10Down
Male accessory glands132 ± 34 of 4 1.40Up
Virgin spermatheca427 ± 224 of 4 4.55Up
Mated spermatheca366 ± 194 of 4 3.90Up
Adult carcass126 ± 174 of 4 1.30None
Larval CNS170 ± 204 of 4 1.82Up
Larval Salivary gland26 ± 64 of 4 0.28Down
Larval midgut10 ± 14 of 4 0.11Down
Larval tubule30 ± 34 of 4 0.30Down
Larval hindgut45 ± 64 of 4 0.49Down
Larval fat body27 ± 34 of 4 0.30Down
Larval trachea13 ± 34 of 4 0.14Down
Larval carcass242 ± 284 of 4 2.58Up
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly93 ± 84 of 4

Looking for FBgn0038237. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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